Yeah, I’m not sure. Git on Replit has always been a bit funky. I made a post a while back which included some weird Git stuff, and @not-ethan reponded with this:
So hopefully it gets more straightforward to identify the problem.
Edit: Git integration has been improved, as said by @not-ethan.
Also, I think this problem is still fixable, though I am not very knowledgeable on Git with Replit because I hardly ever use it, though many other users can probably assist.